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sourmash

v0.18.0

Published

tools for comparing biological sequences with k-mer sketches

Downloads

198

Vulnerabilities

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Links

Git

Maintainers

luizirberluizirber

Keywords

minhashbioinformatics

Readme

sourmash

🦀 Rust API Documentation on docs.rs build-status codecov

Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.

This is the core library used by sourmash. It exposes a C API that can be called from FFI in other languages, and it is how we use it in Python for building the sourmash application (CLI and Python API).

sourmash is a product of the Lab for Data-Intensive Biology at the UC Davis School of Veterinary Medicine.

Support

Please ask questions and files issues on Github.

Development

Development happens on github at sourmash-bio/sourmash.

Minimum supported Rust version

Currently the minimum supported Rust version is 1.66.0.