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sequence-analyses

v1.2.0

Published

Submit sequence(s) to external analysis services

Downloads

24

Vulnerabilities

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  • 0High
  • 0Medium
  • 0Low

Links

Git

Maintainers

aurel-laurel-l

Keywords

sequenceproteinchainebiinterprointerproscanhmmerhmmscandomainfamilybioinformaticsirbpdbfasta

Readme

NPM version

Description

Extract sequences from input file or from standard input. Sends them to external services, HMMer web server, and InterProScan. Retrieve the results and store them into a JSON file

Installation and usage

Global installation:

npm install -g sequence-analyses

Usage without installation:

npx sequence-analyses

Usage after global installation:

sequence-analyses

Options

| flag | alias | description | choices | default | | ---- | -------------- | ------------------------------------------------------ | ----------- | -------- | | -i | --input | Input file or string | [string] | stdin | | -t | --type | Type of input | pdb | pdb | | | --email | Email address (required by InterProScan) | [string] | | | -o | --output | Output file | [string] | stdout | | | --force-output | Force overwriting the output file if it already exists | [boolean] | false | | -s | --silent | Don't output anything to stderr (no spinner) | [boolean] | false | | | --version | Show version number | | | | | --help | Show help | | |