pdb-uniprot-viewer
v1.0.0
Published
It displays a summary of PDB entries contains a sequence mapped to a particular UniProt code. It is a PDB Component developed using D3.js and AngularJS.
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mandarsdReadme
PDB UniProt Viewer
The PDB UniProt viewer displays a summary of PDB entries contains a sequence mapped to a particular UniProt code. The mapping indicates what coverage of a UnipProt accession is available in the PDB archive. Graphics also indicate whether the sequence in a given PDB entry differs from that in UniProt (for instance, it contains engineered mutations or expression tags).
It is a PDB Component Library component.
Getting Started
It takes only 3 easy steps to get started with PDB Components.
- Include module files and required dependencies
- Install the component
- Use component as custom element anywhere in the page
If you have installed the PDB Component Library in your application then you can directly start using the component as custom element (refer step 3).
1. Include module files and dependencies
Download the module javascript and stylesheet files (pdb.uniprot.viewer.min.js and pdb.uniprot.viewer.min.css) stored in the 'build' folder. Include the files in your page <head> section.
You'll also need to include the D3.js, AngularJS library files and pdb-prints component files (please refer 'bower.json' file for complete dependency details).
<!-- D3.js and AngularJs dependency scripts (these can be skipped if already included in page) -->
<script src="bower_components/d3/d3.min.js"></script>
<script src="bower_components/angular/angular.min.js"></script>
<!-- PDB Prints CSS and script -->
<link rel="stylesheet" href="bower_components/pdb-prints/build/pdb.prints.min.css" />
<script src="bower_components/pdb-prints/build/pdb.prints.min.js"></script>
<!-- minified component CSS and script -->
<link rel="stylesheet" href="build/pdb.uniprot.viewer.min.css" />
<script src="build/pdb.uniprot.viewer.min.js"></script>2. Installation
As soon as you've got the dependencies and library files included in your application page you just need to include following installation script :
I) If you are developing an AngularJs Application
<script>
angular.module('myModule', ['pdb.uniprot.viewer']);
</script>II) For other Applications
<script>
(function () {
'use strict';
angular.element(document).ready(function () {
angular.bootstrap(document, ['pdb.uniprot.viewer']);
});
}());
</script>3. Using component as custom element anywhere in the page
The component can be used as custom element, attribute or class anywhere in the page.
<!-- component as custom element -->
<pdb-uniprot-viewer entry-id="P07550" height="370" width="750"></pdb-uniprot-viewer>
<!-- component as attribute -->
<div pdb-uniprot-viewer entry-id="P07550" height="370" width="750"></div>
<!-- component as class -->
<div class="pdb-uniprot-viewer" entry-id="P07550" height="370" width="750"></div>
Documentation
Attributes
| Sr. No. | Attribute | Values | Description | |:-------------:|:-------------|:-----|:-----| | 1 | entry-id | UniProt ID Mandatory attribute! | Example : entry-id="P07550" | | 2 | hide-pdb-prints |Boolean (true/false) (Optional Attribute)Default : 'false' |Removes the PDB Prints component from the viewer.Example : hide-pdb-prints="true" | | 3 | height | Number (Optional Attribute) |Example : height="370" | | 4 | width | Number (Optional Attribute) |Example : width="750" | | 5 | subscribe-events | Boolean (true/false) (Optional Attribute)Default : 'true' |Subscribes to custom events of other PDB Components.Example : subscribe-events="true" |
Custom Events
Use this to subscript/bind events of this component. Event data (available in key = 'eventData') contains information about the residue number, chain, entry and entity, etc.
| Sr. No. | Event | Description | |:-------------:|:-------------|:-----| | 1 | PDB.uniprotViewer.click | use this to bind to click event Example: document.addEventListener('PDB.uniprotViewer.click', function(e){ //do something on event }) | | 2 | PDB.uniprotViewer.mouseover | use this to bind to mouseover event Example: document.addEventListener('PDB.uniprotViewer.mouseover', function(e){ //do something on event }) | | 3 | PDB.uniprotViewer.mouseout | use this to bind to mouseout event Example: document.addEventListener('PDB.uniprotViewer.mouseout', function(e){ //do something on event }) |
Please refer this link for more documentation, demo and parameters details.
Contact
Please use github to report bugs, discuss potential new features or ask questions in general. Also you can contact us here for support, feedback or to report any issues.
License
The plugin is released under the Apache License Version 2.0. You can find out more about it at http://www.apache.org/licenses/LICENSE-2.0 or within the license file of the repository.
If you are interested in this plugin...
...you might also want to have a look at the PDB Component Library.
"# pdb-uniprot-viewer"