This package is the main module of node-red-contrib-biotools project. This node-red module implements the reading, parsing and writing several genomic and bioinformatic formated data, such as:

• RAW sequence preprocessing.
• FASTA file reading, writing and parsing.
• JASPAR PFM file reading and parsing.
• Genbank file reading and parsing.

The whole biotools project has three different node-red modules:

• node-red-contrib-biotools: data input / output and parsing.
• node-red-contrib-biotools-sequence: sequence management.
• node-red-contrib-biotools-analysis: genomic sequence analysis.

Functionalities:

• RAW sequence preprocessing. (node-red-contrib-biotools package)
• FASTA file reading, writing and parsing. (node-red-contrib-biotools package)
• JASPAR PFM file reading and parsing. (node-red-contrib-biotools package)
• Genbank file reading and parsing. (node-red-contrib-biotools package)
• Sequence type detection. (node-red-contrib-biotools-sequence package)
• Nucleotide counting. (node-red-contrib-biotools-analysis package)
• Reverse sequencing. (node-red-contrib-biotools-sequence package)
• Complementary sequence. (node-red-contrib-biotools-sequence package)
• Transcription. (node-red-contrib-biotools-biotools-sequence package)
• Translation. (node-red-contrib-biotools-biotools-sequence package)
• Sequence management. (node-red-contrib-biotools-sequence package)
• Hamming distance. (node-red-contrib-biotools-analysis package)
• Transition / transversion ratio. (node-red-contrib-biotools-analysis package)
• Alignment analysis (needleman-wunsch algorithm) (node-red-contrib-biotools-analysis package)
• Motif scores based on PFM matrix. (node-red-contrib-biotools-analysis package)

This package is an alpha version for testing only purposes and there is no guarantee that the results will be accurate.

It may contain errors, the author assumes no responsibility or liability for any errors or omissions in the content of this project.

The information contained in this project is provided on an "as is" basis with no guarantees of completeness, accuracy, usefulness or timeliness.

Read detailed documentation about the module at:

https://github.com/ferrithemaker/biotools/wiki

Please, report any issues at:

https://github.com/ferrithemaker/biotools/issues

Send suggestions at:

ferri dot fabcar at gmail dot com