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muts-needle-plot

v0.9.1

Published

Draws a Needle-Plot for mutation data (stacked).

Downloads

23

Vulnerabilities

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  • 0Medium
  • 0Low

Links

Git

Maintainers

bbglabbbglab

Keywords

needle-plotmutationsvisualizationplotlollipop-plotstem-plotgenomicsbiojs

Readme

Mutations Needle Plot (muts-needle-plot)

A needle-plot (aka stem-plot or lollipop-plot) plots each data point as a big dot and adds a vertical line that makes it appear like a needle.

DOI

This software is citable! Different citation styles available at http://dx.doi.org/+DOI

Availability

Image of a Needle-Plot

Examples (snippets)

This library is can be found as npm-library in the BioJS registry.

Thus examples can bee seen at the biojs.net registry: http://biojs.net/

Installation

Install npm

If you want to install the latest release MutNeedles on your machine, you need to have npm installed.

Install Mutations Needle Plot (muts-needle-plot)

Once you have npm installed you may install the latest release (from the npm-repository) or the develop-version (the code from GitHub).

  • Latest npm release:

    • npm install muts-needle-plot. This command will retrieve the latest release from the npm-repository (https://www.npmjs.org/)
    • Enter the created directory cd node_modules/muts-needle-plot.
    • Run the examples (snippets) with the command npm run sniper and access them at the url http://localhost:9090/snippets/ in your browser

  • Latest develop version from GitHub

    • Clone the MutNeedles repository from your computer: git clone https://github.com/bbglab/muts-needle-plot.git
    • Enter the newly created code dir and install it with npm: npm install
    • Run the examples (snippets) with the command npm run sniper and access them at the url http://localhost:9090/snippets/ in your browser

Proxy

Watch out, if you are sitting behind a (corporate) proxy, you should communicate this to npm as follows before trying to install the libraries:

npm config set proxy http://proxy.company.com:8080
npm config set https-proxy http://proxy.company.com:8080

Issues

Please report issues at: https://github.com/bbglab/muts-needle-plot/issues

Authors

Michael Schroeder