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mitochondrial-muscle

v0.1.0

Published

This is Node.js wrapper over [MUSCLE](http://drive5.com/muscle/) software specifically for mitochondrial genomes aligning.

Downloads

3

Vulnerabilities

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Links

Maintainers

stasundrstasundr

Keywords

Readme

mitochondrial-muscle

This is Node.js wrapper over MUSCLE software specifically for mitochondrial genomes aligning.

process.env.MUSCLE_BIN should be set to MUSCLE binary path.

Usage

const muscle = require('mitochondrial-muscle')

...
const reference = 'RSRS' // or 'rCRS'
const [seq1, seq2] = await muscle.align(pathToMyFasta, reference)
const ref = seq1.label === reference ? seq1 : seq2
const seq = seq1.label !== reference ? seq1 : seq2
...

Tests

yarn test