HyPhy Vision

Visualize HyPhy results in your browser.

This repository holds visualizations written in React and D3 for JSON results generated by HyPhy. Reading raw numerical data can be tedious, and would oftentimes require a number of post-processing steps in your favorite scripting language to make sense of it. While you definitely can still do that, we provide custom, interactive, web-based visualizations to help facilitate making inferences about your results and less time data munging.

Start viewing your results now

Visit the associated site for this page at here.

I don't have results though, and I'm not sure where to begin

If you want to start exploring various ways of detecting selection on your sequence data now, please visit Datamonkey or Datamonkey Test with your multiple sequence alignment ready (in FASTA or NEXUS format). You can also run our methods locally by installing HyPhy.

Contributing

Read our contributing guide to learn about our development process, how to propose bugfixes and improvements, and how to build and test your changes.

Development

Installation

HyPhy Vision uses yarn for package management.

git clone https://github.com/veg/hyphy-vision
cd hyphy-vision
yarn

Dev Server

Start the development server:

yarn start

Deployment

Deploy in a production environment:

webpack
supervisor server.js

Electron

Start the desktop application:

yarn run electron