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genecluster-vis

v0.0.1

Published

Interactive gene cluster visual representation for the web

Downloads

7

Vulnerabilities

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Links

Git

Maintainers

linjoeylinjoey

Keywords

Readme

genecluster-vis

0.0.1 screencap

This is a d3.js based web tool for gene cluster visual representation (in the sense of physical genomic locations). Data is loaded from NCBI's gene database and rendered with SVG.

Demo

For a live demo visit here: http://linjoey.github.io/genecluster-vis/

Drag to pan, scroll to zoom.

Agenda

  • Encode transcripts/exons when zoomed in enough
  • Allow fast jumping to any gene or genomic/cytogentic location
  • Add tooltip with extra info/links to NCBI entry
  • Add chromosome VR
  • Support external file loading, Genbank?
  • Bugs:
    • Dont let user scroll past bounds
    • Dynamic Height calculations
    • Hide titles if there's not enough room, or somehow show it
    • laggy on huge data loads

API

**under development

License

MIT