fhir-backup

A command line tool for performing common tasks on FHIR® resources.

Installation

# Install globally
npm install fhir-tools -g

# Clone and install
git clone https://github.com/lantanagroup/fhir-tools
cd fhir-tools
npm install 

Commands

# If installed globally
spec-tools <command> <parameters> --options

# If running from cloned repo
node index.js <command> <parameters> --options

| Command | Description | |---------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | create-bundle | Creates a bundle from one or more paths in the form of directories, package.tgz files on the file system, or urls to package.tgz files | | fixids | Fix number-only ids of resources in a bundle so they can be imported with HAPI | | delete | Delete all resources from a FHIR server | | transfer | Transfer resources from one server to another | | import | Import resources from a Bundle file onto the specified server | | bulk-analyze | Analyze resources from bulk ndjson files in a directory | | compare | Compare the resources from one FHIR server to another | | export | Export data from a FHIR server | | get-all-resource-ids | Gets all resource ids for the specified resource types from a FHIR server | | xml-to-json | Converts a XML file (or all XML files in a directory) to JSON. Stores the JSON file as the same file name as the XML file, but with an JSON extension, instead. | | json-to-xml | Converts a JSON file (or all JSON files in a directory) to XML. Stores the JSON file as the same file name as the XML file, but with an JSON extension, instead. | | create-code-system | Create a code system from a source file, such as RXNorm or SNOMED-CT. This command is VERY basic and does not currently account for many of the complexities of SNOMED and RXNORM code systems. This is only intended as a starting point and should not be used in production systems that require reliability. | | transaction | Execute a bundle as a transaction on the destination fhir server | | bundle | Updates an existing bundle to be a specific type of bundle. If batch or transaction, ensures that all entries have a request |

Help

# If installed globally:
fhir-tools --help
fhir-tools <command> --help

# If running from cloned repo
node index.js --help
node index.js <command> --help