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cy-jupyterlab

v0.6.0

Published

JupyterLab extension for graph (network) visualization.

Downloads

4

Vulnerabilities

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Links

Git

Maintainers

keionokeiono

Keywords

jupyterjupyterlabjupyterlab-extensioncytoscape

Readme

cy-jupyterlab

A Jupyter Lab extension for interactive graph (network) data visualization

tab

Introduction

Cy-JupyterLab is a Jupyter Lab extension for interactive graph visualization. Current version supports the following data types:

cell

Features

  • Interactive network visualization in Panels.
  • Supports visualization in Jupyter Notebook cells
  • Full support for Cytoscape.js compatible styles
  • Support for data from NDEx) database.
  • Simple node/edge property panel
    • Display filename, number of nodes and edges (elements) in graph
  • Automatic layouts

Requirments

  • JupyterLab - Tested on v0.34.10

Optional

  • ndex2 - this is a python library to import data from NDEx. If you want to use NDEx data sets, this provides high-level API to access the data

Installation

v0.1.0

jupyter labextension install @iau/cy-jupyterlab

v0.5.0 and later (Not released yet)

jupyter labextension install cy-jupyterlab

For Developers

To build the extension from the source, please do the following in the cloned directory:

npm install
npm run build
jupyter labextension link .

To rebuild the package and the JupyterLab app:

npm run build
jupyter lab build

Acknoowledgment

The prototype was developed by the following students as a summer project 2018:

  • Hideki Akazawa (University of Osaka, Japan)
  • Kaito Uemura (University of Osaka, Japan)

© 2018 University of California, San Diego

Trey Ideker Lab