cql-testing-harness
v0.0.4
Published
A tool for testing the development of CQL libraries
Downloads
26
Readme
cql-testing-harness
A utility for translating, executing, and testing CQL libraries.
Prerequisites
Users also need to configure a .env
file in your CQL repository, defining the following values:
TRANSLATION_SERVICE_URL='http://localhost:8080/cql/translator' # An endpoint exposing a CQL translation service
INPUT_CQL='./cql' # Folder(s) containing all CQL to translate
VALUESETS='./valuesets' # Folder where CQL-dependent valuesets live
OUTPUT_ELM='./output-elm' # Folder where translated ELM will be saved
PATIENTS='./test/fixtures/patients' # Folder storing patient files used as test fixtures
The INPUT_CQL
value can take multiple directories, separated by a comma, in order to tell the testing harness to look in more than one directory for CQL files.
INPUT_CQL='cqlDir1,cqlDir2,cqlDir3'
...
Usage
Install the testing harness into your project:
npm install --save cql-testing-harness
This will allow your project to access the testing scripts, as well as the exported utilities for executing your CQL.
Scripts
test-cql
test-cql [-n] [-t path/to/test/directory]
-n
: When this option is included, the script will not start a new cql-translation-service docker container. When using this option, ensure you have an instance of the translation service running on your machine at the URL specified in .env-t
: This option allows you to specify a specific directory or pattern thatjest
should use to run the tests. If omitted, the script will usejest
's default which is any file that ends in.test.js
This script will do the following:
- Start a cql-translation-service docker container
- Translate all CQL in the
INPUT_CQL
directory into ELM JSON and write it toOUTPUT_ELM
. This will only occur if CQL files in theINPUT_CQL
have changed and the ELM needs to be updated - Run the unit tests present in the specified test directory
translate-cql
translate-cql
This script will only do step 2. from above: translate all CQL in theINPUT_CQL
directory into ELM JSON and write it to OUTPUT_ELM
. This will only occur if CQL files in the INPUT_CQL
have changed and the ELM needs to be updated
Utilities
Fixture Loading
loadJSONFromDirectory(pathToDir)
: loads all JSON files in pathToDir
and returns the contents as an array
pathToDir
(string
): absolute path to the directory containing the JSON files
loadJSONFixture(pathToFixture)
: loads the JSON file present at pathToFixture
and returns the parsed contents
pathToFixture
(string
): absolute path to the JSON file
defaultLoadElm()
: loads the ELM JSON present at the OUTPUT_ELM
value specified in .env
defaultLoadPatients()
: loads all of the patient bundle JSONs present at the PATIENTS
value specified in .env
defaultLoadValuesets()
: loads all of the ValueSet JSON files present at the VALUESETS
value specified in .env
CQL Execution Utilities
mapValueSets(valueSetResources)
: converts the list of FHIR ValueSet JSON content into a cql-execution CodeService
valueSetResources
(Array<FHIR ValueSet JSON>
): Array of parsed FHIR ValueSet JSON objects
execute(elmJSONs, patientBundles, valueSetMap, libraryID)
: executes the provided ELM against the list of patient records and returns execution results.
elmJSONs
: Array of ELM JSON contentpatientBundles
: Array of parsed patient bundle JSONvalueSetMap
: a CQL CodeService object for all of the ValueSets needed in the CQL library (can be obtained usingmapValueSets
from above)libraryID
: The identifier of the "main" ELM library that is the root of your CQL repository
Full Example
Setup
.env
with necessary content# .env contents TRANSLATION_SERVICE_URL='http://localhost:8080/cql/translator' # An endpoint exposing a CQL translation service INPUT_CQL='./cql' # Folder(s) containing all CQL to translate VALUESETS='./valuesets' # Folder where CQL-dependent valuesets live OUTPUT_ELM='./output-elm' # Folder where translated ELM will be saved PATIENTS='./test/fixtures/patients' # Folder storing patient files used as test fixtures
Install
cql-testing-harness
npm install --save cql-testing-harness
Create a test for your CQL:
/* example.test.js */ const dotenv = require('dotenv'); const { defaultLoadElm, defaultLoadPatients, defaultLoadValuesets, mapValueSets, execute, } = require('cql-testing-harness'); // Initialize the env variables dotenv.config(); let executionResults; beforeAll(() => { // Set up necessary data for cql-execution const valueSets = defaultLoadValuesets(); const valueSetMap = mapValueSets(valueSets); const elm = defaultLoadElm(); const patientBundles = defaultLoadPatients(); executionResults = execute(elm, patientBundles, valueSetMap, 'ExampleLibrary'); }); test('Example Tests', () => { expect(executionResults).toBeDefined(); });
Create script(s) for running the tests/doing translation in
package.json
"scripts": { "test": "test-cql -t path/to/test/directory", "translate": "translate-cql" ... } ...
Run the test script to translate the CQL into ELM and get the execution results to use in unit test assertions:
npm run test
Example output:
> test-cql -t ./test > Starting cql-translation-service 1a792ea3a528d707379e2e0c4d6842e317792167812eeb1b6df86a35c5fc1caf > Waiting for server ..> Translating CQL Wrote ELM to output-elm/example.json > Running unit tests PASS test/example.test.js ✓ Example Tests (2 ms) Test Suites: 1 passed, 1 total Tests: 1 passed, 1 total Snapshots: 0 total Time: 2.06 s Ran all test suites matching /.\/test/i. > Stopping cql-translation-service cql-translation-service