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codev4graph-parsers

v1.0.3

Published

A set of function to produce JSON-Graph data

Downloads

5

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Links

Git

Maintainers

scarrerescarrere

Keywords

Readme

CODEV4GRAPH-PARSERS

Overview

A set of function to parse files and produce JSON-Graph data JSON format for graph-based visualization.

  • Easy integration with graph codev4graph tools
  • Supports large datasets

Features

ParseOBOFile

Convert OBO file

  • Option: Filter on specific namespace (eg: for GeneOntology, "biological_process" or "molecular_function")

ParseOrthoFinderTsvFile

Convert OrthoFinder TSV file

  • Option: Filter on a specific Orthogroup from group id or protein id

ParseNicknamesTsvFile

Convert Nicknames TSV file

  • Option: Filter on a specific dataset or gene id

Installation

npm i codev4graph-parsers

Usage

import { ParseOboFile, ParseOrthoFinderTsvFile } from "codev4graph-parsers";

CLI usage

Graph description

The graph produced follows the JSON-Graph standard as described here

License

This project is licensed under the Apache License 2.0. See the LICENSE file for details.

Contact

For questions or feedback, please open an issue or contact us at [email protected]