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bitk-headers

v0.1.0-0

Published

A library to support headers compatible with BITK's standard.

Downloads

19

Vulnerabilities

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Links

Git

Maintainers

daviortegadaviortega

Keywords

bioinformaticsheaderbiowonkscomparativegenomics

Readme

bitk-headers

npm License: CC0-1.0 pipeline status coverage report

A library to support headers compatible with BITK's standard. Written in TypeScript.

Install

npm install bitk-headers

Versions

BitkHeader version 3

The newest version of BitkHeaders follows the implementation of stable genes ids from MiST3. This version cannot be translated to Version 1 or 2 (see below) because it does not have the legacy MiST2 genome ids. However, versions 1 and 2 can be translated to this version with access to the MiST3 API.

Version 3: Xx_yyy|genome_ncbi_version-locus|extra fields`

Example: My_xan|GCF_000012685.1-MXAN_RS12980

|item | Description | |:-|:-| |Xx | First two letter of genus |yyy| First three letters of species |genome_ncbi_version | NCBI genome version code |locus| Locus number of the gene |extra fields | any other annotation needed: classifications and etc.

BitkHeaderLegacy version 1 and 2

Version 1: Xx.yyy.NNN-locus-accession-extra fields
Example: My.xan.508-MXAN_2680-YP_630897.1
Version 2: Xx_yyy_NNN|locus|accession|extra fields
Example: My.xan.508-MXAN_2680-YP_630897.1

|item | Description | |:-|:-| |Xx | First two letter of genus |yyy| First three letters of species |NNN| MiST2 genome id |locus| Locus number of the gene |accession | NCBI accession number |extra fields | any other annotation needed: classifications and etc.

Developer's Documentation

... to be continued.

Written with ❤ in Typescript.