biowc-pathwaygraph
v0.1.4
Published
Webcomponent biowc-pathwaygraph following open-wc recommendations
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17
Readme
biowc-pathwaygraph
biowc-pathwaygraph
is a WebComponent for interactive visualization of signaling pathway diagrams.
In addition to rendering the genes, proteins and compounds within a pathway, PTM and expression data can be projected onto the diagram.
Our storybook
contains an overview of the features of biowc-pathwaygraph
. Here's how to run it:
- Clone this repository
- Install the dependencies:
npm install
- Start Storybook:
npm run storybook
This webcomponent follows the open-wc recommendation.
Installation
npm i biowc-pathwaygraph
Usage
Please check demo/index.html
for a minimal working example.
Linting and formatting
To scan the project for linting and formatting errors, run
npm run lint
To automatically fix linting and formatting errors, run
npm run format
Testing with Web Test Runner
To execute a single test run:
npm run test
To run the tests in interactive watch mode run:
npm run test:watch
Tooling configs
For most of the tools, the configuration is in the package.json
to reduce the amount of files in your project.
If you customize the configuration a lot, you can consider moving them to individual files.
Local Demo with web-dev-server
npm start
To run a local development server that serves the basic demo located in demo/index.html
Reference
If biowc-pathwaygraph
is useful for your research, please cite the following publication:
PTMNavigator: Interactive Visualization of Differentially Regulated Post-Translational Modifications in Cellular Signaling Pathways
Julian Müller, Florian P. Bayer, Mathias Wilhelm, Bernhard Kuster, Matthew The
bioRxiv 2023.08.31.555601; doi: https://doi.org/10.1101/2023.08.31.555601