biojs-vis-tsne
v0.1.1
Published
A t-SNE web visualisation for high dimensional data
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biojs-vis-tsne
A t-SNE web visualisation for high-dimensional data
Research Paper
The algorithm was originally described in this paper:
L.J.P. van der Maaten and G.E. Hinton.
Visualizing High-Dimensional Data Using t-SNE. Journal of Machine Learning Research
9(Nov):2579-2605, 2008.
You can find the PDF here.
Getting Started
Install the module with: npm install biojs-vis-tsne
var tsne = require('biojs-vis-tsne');
tsne.run({
path:"path/to/csv",
width:900, //default
height:600, //default
id:"tsne" //default div id
})
tsne.setPerplexity(30); //Default 10
Documentation
tsne.run(opts)
The 'run' method takes the id of a div and creates a t-SNE visualisation of csv data (given its path)
tsne.setPerplexity(int)
The 'setPerplexity' method takes an integer as input parameter
Contributing
All contributions are welcome.
Support
If you have any problem or suggestion please open an issue here.
License
This software is licensed under the Apache 2 license, quoted below.
Copyright (c) 2015, David
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.