Bio-Geolocation with GenBank and Fasta files

Looks up the location of sequences in GenBank and adds it to a FASTA file. - https://omnicoders.org/

Installation

npm install @miamiruby/bio-geolocation

Requirements

Node JS and Git are required to clone, install and run this project.

Clone

In your terminal, clone the project to a local subdirectory:

git clone https://github.com/omnicoders/bio-geolocation.git

Change Directory To Project

cd bio-geolocation

Install Dependencies

npm install

Usage

    node scrape.js ./fasta/suillus.fas ./output.json

Code Usage

var bioGeolocation = require('@miamiruby/bio-geolocation');

var result = bioGeolocation('filename');

Output should be something

Tests

npm test

Contributing

In lieu of a formal style guide, take care to maintain the existing coding style. Add unit tests for any new or changed functionality. Lint and test your code.

Authors

Mathew Stewart https://github.com/matthewstewart

Paul Kruger    https://github.com/miamiruby