@teselagen/sequence-utils
v0.3.27
Published
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Downloads
17,061
Readme
- [CHANGELOG](#changelogchangelogmd)
- Installing
- Usage
- About this Repo
- Editing This Repo:
- Updating this repo:
- Building
- Running unit tests
CHANGELOG
Installing
npm install @teselagen/sequence-utils
Usage
import { getComplementSequence } from '@teselagen/sequence-utils';
const mySequence = 'ATGAGAG';
const myComplement = getComplementSequence(mySequence);
console.log(myComplement); // TACTCTC
About this Repo
This is a collection of dna sequence utility functions.
All sequences and annotations (unless otherwise specified) are assumed to have 0-based inclusive indices.
Example:
0123456
ATGAGAG
--fff-- (the feature covers GAG)
0-based inclusive start:
feature.start = 2
1-based inclusive start:
feature.start = 3
0-based inclusive end:
feature.end = 4
1-based inclusive end:
feature.end = 5
Editing This Repo:
All collaborators:
Edit/create a new file and update/add any relevant tests.
Make sure they pass by running npm test
Updating this repo:
Commit and push all changes first (make sure tests are passing!)
Teselagen collaborators:
Commit and push all changes Sign into npm using the teselagen npm account (npm whoami)
npm version patch|minor|major
npm publish
Outside collaborators:
fork and pull request please :)
This library was generated with Nx.
Building
Run nx build sequence-utils
to build the library.
Running unit tests
Run nx test sequence-utils
to execute the unit tests via Jest.