Linear Representation of a gene with sgRNA distribution

Usage

Need two properties : all_sgrna and gene. Others properties are by default but be careful concerning the property width_div.

all_sgrna

A string in JSON format, with the sgRNA as key and a list of coordinates as values. This list must match the regex : [+-]\([0-9]*,[0-9]*\) .

{ "AAAGGTACTCCGGGGATAACAGG":["+(3343404,3343426)","+(4024637,4024659)","+(4270051,4270073)","+(4361123,4361145)","+(4466866,4466888)","-(255252,255274)","-(842752,842774)"],
  "AACGGATAAAAGGTACTCCGGGG":["+(3343412,3343434)","+(4024645,4024667)","+(4270059,4270081)","+(4361131,4361153)","+(4466874,4466896)","-(255244,255266)","-(842744,842766)"],
  "ATGTCGGCTCATCACATCCTGGG":["+(3343334,3343356)","+(4024567,4024589)","+(4269981,4270003)","+(4361053,4361075)","+(4466796,4466818)","-(255322,255344)","-(842822,842844)"],
  "ACCTTTTATCCGTTGAGCGATGG":["+(255235,255257)","+(842735,842757)","-(3343421,3343443)","-(4024654,4024676)","-(4270068,4270090)","-(4361140,4361162)","-(4466883,4466905)"]}

gene

A string in JSON format, a list of dictionary with start and end as key and coordinates as values.

[{"start":"255180","end":"255599"},{"start":"842680","end":"843099"},{"start":"3343077","end":"3343496"},{"start":"4024310","end":"4024729"},{"start":"4269724","end":"4270143"},{"start":"4360796","end":"4361215"},{"start":"4466539","end":"4466958"}]

width_bar

default : 90% Need a percentage for the width of the bar which represents the gene.

nb_step

default : 20 The number of bar in histogram.

width_div

default : screen.width If the component is under a div, give the width of the div to calculate the width of the histogram according to the width of the bar.

Event

None

Authors

Sophie LEMATRE

Date

July 17 2019