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@kiranbandi/synvisio

v4.0.0

Published

Interactive Multiscale Visualization Tool for Exploring Syteny

Downloads

2

Vulnerabilities

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Links

Maintainers

kiranbandikiranbandi

Keywords

syntenyvisualizationwhole-genomereactreduxd3

Readme

SynVisio

SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit and DAGChainer (similar tool).

SynVisio is available for free to use at https://synvisio.github.io.

SynVisio requires two files to run:

  • The simplified gff file that was used as an input for a McScanX query.
  • The collinearity file generated as an output by McScanX for the same input query.

SynVisio can be directly plugged into a webpage by loading the JS file and initializing it. You need to provide the id of the container into which SynVisio will be rendered. You also need to provide the input files in the form of a collinearity file, gff file and additional tracks files if needed.