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@ebi-gene-expression-group/scxa-tsne-plot

v6.3.4

Published

A twin plot of metadata and gene expression to display t-SNE plots in Single Cell Expression Atlas

Downloads

135

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Links

Git

Maintainers

ebi-karelebi-karelalfonsomunozpomeralfonsomunozpomerlingyun1010lingyun1010haideriqbalhaideriqbalukumbhamukumbham

Keywords

Readme

t-SNE plot for Single Cell Expression Atlas experiments

Build Status Coverage Status

Visualisation of t-SNE plots of single cell expression experiments for Single Cell Expression Atlas. The component is able to select and display different plots for more than one perplexity value, and several clustering strategies. At the moment only the number of clusters produced by different values of k in single-cell consensus clustering (SC3) is supported.

It uses Highcharts for plotting and expects the series property in the JSON payload of both plots to adhere to Highcharts series format for scatter plots.

Elements use classes from the EBI Visual Framework for styling and layout.

To test this component, please uncomment HighchartsExporting(Highcharts) HighchartsOfflineExporting(Highcharts) HighchartsBoost(Highcharts) in Scatterplot.js first, as highcharts wrappers are not been supported in the test.