Gemma

Gemma is a javascript library and command-line application for exploring and geographic mapping genetic variations in populations.

• CLI documentation
• API documentation

| Build Status | |:-----------------------------------------------------------------------------------------------:| | |

Installation

To install and use Gemma you'll first need to install node.js v10.15.1 or greater. On Linux and Mac OS, we recommend using nvm.

If you are primarily going to be using Gemma's CLI, you should install it globally

> npm install --global @dglmoore/gemma

This will install the scripts so that you can run execute them at the command-line.

If, on the other hand, you are wanting to use Gemma as a dependency for your personal javascript project, then you'll want to install it locally

> npm install --save @dglmoore/gemma

This will install the library and scripts in the node_modules directory of your npm project and let you used them within your source files.

Getting Help

Gemma is being developed to make exploring genomic data as easy as possible. We cannot do that without your feedback. We host the project's source code and issue tracker on Github. Please create an issue if you find a bug, an error in the documentation, or have a feature you'd like to request. Your contributions will make Gemma a better tool for everyone.

Source Repository: https://github.com/dglmoore/gemma

Issue Tracker: https://github.com/dglmoore/gemma/issues

Relevant Publications

In the works...

Copyright and Licensing

Copyright © 2018-2019 Greer Dolby and Douglas G. Moore. Free use of this software is grated under the terms of the MIT License.

See the LICENSE file for details.