nodes-models: DeSci Labs Research Object Module

nodes-models is a module within the DeSci Nodes open-source repository that provides a simplified and structured way to manage research artifacts, including data, code, PDFs, and more. This module is designed with a focus on supporting semantic web technologies by enabling JSON-LD through the RO-Crate 1.1 format and planning to support RDF, SPARQL, and more in the future.

The module includes TypeScript interfaces for defining research objects, a conversion script for transforming research objects to and from the RO-Crate format, and sample tests to validate the functionality of the module.

Features

• TypeScript interfaces for defining research objects with a structured and extensible format.
• Import and export research objects in the RO-Crate format, supporting JSON-LD.
• Validate research objects using TypeScript interfaces and the ts-interface-checker package.
• Support for a wide variety of research artifact types, such as data, code, PDFs, external links, etc.
• Planned support for RDF, SPARQL, and more semantic web technologies.
• Planned support for companion tools to vectorize PDF/document text content for LLM consumption.

Getting Started

To get started with the nodes-models module in the DeSci Nodes project, follow the steps below:

Prerequisites

• Make sure you have Node.js (version 14 or higher) and npm (version 6 or higher) installed.

Installation

1. Clone the DeSci Labs "nodes" repository:

git clone https://github.com/desci-labs/nodes.git

2. Install the dependencies:

cd nodes/desci-models
yarn install

Running the Tests

To run the provided tests for the nodes-models module, execute the following command:

yarn test

Usage

Creating a Research Object

Create a research object using the provided TypeScript interfaces in the nodes-models module:

import { ResearchObjectV1 } from './nodes-models/ResearchObject';

const researchObject: ResearchObjectV1 = {
  version: 'desci-nodes-0.2.0',
  title: 'My Research Project',
  // ...
};

Converting a Research Object to and from RO-Crate format

Import the RoCrateTransformer class and use it to convert a research object to and from the RO-Crate format:

import { RoCrateTransformer } from './nodes-models/transformers/RoCrateTransformer';

const transformer = new RoCrateTransformer();
const roCrate = transformer.exportObject(researchObject);
const importedResearchObject = transformer.importObject(roCrate);